Biopy - a toolkit for multi-domain translation

• s277910 BIANCO MORGHET FRANCESCO

• s269781 FANÌ EROS

• s276047 GOLETTO GABRIELE

• s276807 TRIVIGNO GABRIELE

This doc is meant to be a user guide on the use of the proposed ‘biopy’ package. Therefore it will focus more on the code structure and purposes, taking for granted that the reader knows about the tasks and the setting of the problems tackled.

For a more in-depth explanation and the motivations of the choices refer to the presentation.

Project guide

• 1. Installation
  • 1.1. Getting started
  • 1.2. Downloading the datasets
• 2. Repository structure
• 3. Datasets
  • 3.1. Basic synthetic dataset usage
  • 3.2. Basic GDC dataset usage
• 4. Models
  • 4.1. Baseline
  • 4.2. Expression Autoencoders
  • 4.3. Image Autoencoders
• 5. Training framework
  • 5.1. Classes diagram
  • 5.2. Representing a pipeline
  • 5.3. The trainer wrapper
• 6. Replicating results
  • 6.1. Strategies
  • 6.2. Run the script
  • 6.3. Plot latent spaces
• 7. Bibliography